Musaddiq Lodi

Musaddiq Lodi

he/him

PhD Student | Single Cell Biology, Bioinformatics, AI/ML

Software

I build open-source packages in Python and R to advance researcher’s understandings of single cell biology and multi-omic data integration.

CORTADO

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Python License Docs

CORTADO is a PyPi package for robust marker gene inference. For a full description of the method as well as the user guide, please see the GitHub repository.

COFFEE

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Python License Docs

COFFEE is a Python software for single cell gene regulatory network inference. For a full description of the method as well as the user guide, please see the GitHub repository.

CHAI

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R License Docs

CHAI is a R package for consensus single cell-type identification. For a full description of the method as well as the user guide, please see the GitHub repository.