Sitemap
A list of all the posts and pages found on the site. For you robots out there, there is an XML version available for digesting as well.
Pages
Posts
Future Blog Post
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Blog Post number 4
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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
CHAI: consensus clustering through similarity matrix integration for cell-type identification
Published in Briefings in Bioinformatics, 2024
Consensus clustering algorithm for scRNAseq cell-type identification
Recommended citation: Lodi MK, Lodi M, Osei K, Ranganathan V, Hwang P, Ghosh P. CHAI: Consensus Clustering Through Similarity Matrix Integration for Cell-Type Identification. Brief Bioinform. 2024;25(5):bbae411. doi:10.1093/bib/bbae411.
COFFEE: Consensus Single Cell-Type Specific Inference for Gene Regulatory Networks
Published in Briefings in Bioinformatics, 2024
Python software for wisdom of crowds marker gene inference on scRNAseq data.
Recommended citation: Lodi MK, Chernikov A, Ghosh P. COFFEE: Consensus Single Cell-Type Specific Inference for Gene Regulatory Networks. Brief Bioinform. 2024;25(6):bbae457. doi:10.1093/bib/bbae457.
CORTADO: Hill Climbing Optimization for Cell-Type Specific Marker Gene Discovery
Published in Biorxiv, 2024
Python package for robust single cell marker gene inference
Recommended citation: Lodi MK, Clark L, Roy S, Ghosh P. CORTADO: Hill Climbing Optimization for Cell-Type Specific Marker Gene Discovery. bioRxiv [Preprint]. 2024 Dec 23:2024.12.23.630040. doi:10.1101/2024.12.23.630040. PMID: 39763976; PMCID: PMC11703242.
talks
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.